User guide

Release time:
2019-11-03 11:35:00
Author:
admin


Navigation module:

Home



The personal center consists of six parts.

The personal information card can display the user's main personal information, including user name, authority, credits, Oscoin, etc.

The task record card can show the recent tasks you have submitted.

The message card includes system message, personal message and system message includes software operation status notification and system push message.

The Omicshare news & events card can show the recent developments released by omicshare.

The Common software cards can show the three most commonly used software.

On the Tool usage statistic card, the top 15 tools with the most use times are displayed in the form of column chart.

At the bottom of the page is the omicshare reference description.


My tools


There are 75 tools in total at present including eight groups: Interactoin analysis, functional analysis, basic graph visualization, cluster analysis, data mining, sequence tools and annotaion tools.

You have to spend some coins to use some tools.

You can quickly search a tool by groups. You can also collect your favorite tools so that you can find it quickly in “my collection” section.


My OScoins

The usage of some tools may require OmicShare coins. If you do not have enough coins, you can earn coins in the following ways:

1: Complete your information of OmicShare, including setting an avatar, mailbox certification, and log in every day.

2: Post or reply in OmicShare Forum. You can get 3 coins for a post and 1 coin for a reply.

3: Invite your friends to register OmicShare. You can get 20 coins for successfully inviting a new user to register and activate his/her account.


Attachment: using software the currency use rules

Credits:


Credits are related to your membership grades. The higher the grade, the more privileges you have. Log in to get one credit every day. You can get three extra credits for consecutive login for a week.


My data

My data section stores all the files users have uploaded. Users can set up new folders, upload and download files, move files, rename files, delete files, search files, and operate in batch. Note that the name of folders and files can not contain specific characters.

We recommend upload the files first before using a tool to save time and speed up task operation. As shown above, users can search a file according key words, file size, file format, modification time, etc.

Recycle bin stores deleted files which can be restored or deleted completely. It supports batch deletion and restoration.


Tool interface

Upload input files and set up parameters in the left. You can refer to Instructions and Example in the right for more information. After submitting your task, the page will switch to task operating page and start running tasks.


My task

Task status includes failure, line up, running, and completed. The system automatically refresh the task list every 3 minutes. Users can also manually refresh the task list every one minute. Users can search tasks by keywords including task ID, task status and submit time.

There is also a Task folder in my data, which save the results of tasks.


Contact us

If you have questions or suggestions, you can tell us in one of the following four ways: QQ, post in forum, send an email, and fill in a form. We recommend QQ, which can get the answers more quickly.


Authority

Release time:
2015-10-19 15:14:22
Author:
admin

Authority

Membership grades include Common User-newbie, Common User-veteran and VIP member in the ascending order. The higher the grade, the more privileges you have. Membership grade is correlated with credits.

Privileges and Functions Common User-newbie Common User-veteran VIP member
Avatar
Credits requirement(points) 1~300 >300 500RMB
Maximum single file size uploaded (M) 200 500 1000
Number of files uploaded at a time (item) 10 15 50
Personal storage capacity (G) 5 20 100
Permission to senior tools paid paid free
Maximum daily task delivery number (item) unlimited unlimited unlimited
Priority of task processing higher highest instant
waitted time to refresh tasks(s) 10 5 0
Video Play paid paid free
Video SpeedUp Player
Distinguished member ID
OSclass video update
OSforum sign in for double bonus
bookshop on sale
note: You are Common User-newbie when registered successfully.

Way to get credits

(1)Log in to get one credit every day. You can get three extra credits for consecutive login for a week.
(2)You can get a point card from OmicShare Forum, Genedenovo website and Genedenovo WeChat Official Account.

How to earn OmicShare coins?

Way 1: Complete your information of OmicShare, including setting an avatar, mailbox certification, and log in every day.
Way 2: Post or reply in OmicShare Forum. You can get 3 coins for a post and 1 coin for a reply.
Way 3: Invite your friends to register OmicShare. You can get 20 coins for successfully inviting a new user to register and activate his/her account.
Earn Coins>>

Case one

Release time:
2015-10-30 10:14:22
Author:
admin

There are two differences in gene expression data (10 _centigrade and 25 _centigrade), need to draw Venn diagram, and get the intersection gene expression of the content, functional annotation present all the information in master genes.
Operation process is to first use Venn diagram tool to obtain the name of the differentially expressed genes the intersection of the two groups, and then use form screening tool to obtain by the intersection of gene expression and functional annotation present all the information in master genes.
①sourcefile: File one     File two
②Files: one is the difference between the two groups of gene expression data, using Venn diagram software input file, you can get the result is the intersection of two groups of different genes gene name.
two is a table showing the gene, an input file when using form filtering software. Can get a intersection gene in total list all of the information.
③The use of tools: Venn diagram      Screening form
1.Draw the Venn diagram, get the difference between the two groups of genes

1)According to the packed data format requirements, submit the task

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2).To view and download the results of the analysis

To the "my tasks" to check the Venn diagram analysis results. Click on the intersection part of the Venn diagram, intersection genetic information will change accordingly. Then intersection gene ID copy, form into the next phase of screening.

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2.Extracted from table showing the gene expression of overlap gene expression quantity information, etc

Copies the intersection of gene ID paste to the filter "form" tools "to extract name list" in the data frame, or saved as a TXT file and upload again. Of gene expression and then upload the entire table, undertake choosing according to whether there is a header, and select the first column.

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3.Submit a task, to check the data
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In this paper, all rights reserved to base all dior biotechnology co., LTD

Case two

Release time:
2015-10-30 10:14:22
Author:
admin
Existing transcriptome data of Chinese cabbage by homologous search with NAC019 homologous gene in arabidopsis thaliana, and get NAC019 is antisense sequence, need to get its first reverse complementary sequence.
Operation: first with sequence formatting tools, get NAC019 reverse complementary sequence, in the use of the blast tool NAC019 sequence alignment to Chinese cabbage transcriptome.
①sourcefile: File one      File two
②Files: one is the fasta format NAC019 nucleic acid sequence, and is antisense sequence input file format tool, get NAC019 reverse complementary sequence.
File is matching the subject sequences, that is, Chinese cabbage transcriptome data, attention must be fasta format
③The use of tools: Sequence format      Blast
1."Sequence format" tool is used to collect NAC019 reverse complementary sequence:

1)NAC019 nucleic acid sequence of the fasta format data input box, or file upload sequences, then select "get the reverse complementary sequence", began to format

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2).View and download the data results

After the completion of the tasks to view the "my tasks", and download the fasta format sequence of results after formatting.

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2.Using "Blast sequence local alignment" NAC019 sequence alignment to Chinese cabbage transcriptome

①Will be just the first step in fasta format of the reverse complementary results input box, or file upload sequences.

②Then upload ratio on the subject of sequence, that is, Chinese cabbage transcriptome data, attention must be fasta format. If the sequence file size is more than the local file upload limit (5 m), shall first upload sequence file to "my documents", and then from the cloud file selection.

③Parameter selection:
1)Expectations (evalue) : the lower the expectations, limit the more strict, the default choice 10;
2)Output format: a total of 12 kinds of formats to choose from, each format specification can be in "case presentations" view;
3)Application: there are five kinds of optional program, choosing a program can be seen behind the selection box after the corresponding specification, also can to the "case presentations" to check the details

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3.Comparing click on "start", the program will begin to run, after the completion of the "my task" to view and download, the results are as follows
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